Mod Loader Version 3.9.0 issues

I installed the newest version of the SML(Version 3.9.0) and it says my mods are not loaded on my server. I start the server and it immediately restarts the title screen loading. I switched back to 3.8.0 and it starts, but crashes again after a few minutes in the game. I am fairly new to this, so maybe I missed something.
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