Fan Confusion

I have a vcore4-idex and while doing the testing of the hotend i realice that the T0 toolhead fan wasn't working after testing it with an external power source i realice it was unusable (maybe a fabric defect) i replace the fan but when doing the testing of the new fan i realice that when i test the T0 hotend the T0 toolhead fan should turn on but instead the controller fan turns on, and when the controller fan should be turn on (when rpi gets hot for example) the T0 toolhead fan turns instead. Not sure why is happening but it seams that this two fans are switched somehow. Any help?
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