Blazeseq: Toolkit for FASTQ parsing
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GitHub - MoSafi2/BlazeSeq
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Update: BlazeSeq is starting going places .
I implemented a collection of quality aggregators in the
statsmodule.
The current QC industry standard is written in Java, and although my implementation is yet to be finalized but I can already see at least 2x performance gain.
With time BlazeSeq should be exposed back to python one day as high-performance pythonic tool to build nice pipelines which you read and understand and still finishes in time.