Coder.com•3y ago

can not activate conda enviornment in `startup_script`

atif@aihwkit:~$ cat build.log 

CommandNotFoundError: Your shell has not been properly configured to use 'conda activate'.
To initialize your shell, run

    $ conda init <SHELL_NAME>

Currently supported shells are:
  - bash
  - fish
  - tcsh
  - xonsh
  - zsh
  - powershell

See 'conda init --help' for more information and options.

IMPORTANT: You may need to close and restart your shell after running 'conda init'.


atif@aihwkit:~$ conda activate DL
(DL) atif@aihwkit:~$

atif@aihwkit:~$ cat build.log 

CommandNotFoundError: Your shell has not been properly configured to use 'conda activate'.
To initialize your shell, run

    $ conda init <SHELL_NAME>

Currently supported shells are:
  - bash
  - fish
  - tcsh
  - xonsh
  - zsh
  - powershell

See 'conda init --help' for more information and options.

IMPORTANT: You may need to close and restart your shell after running 'conda init'.


atif@aihwkit:~$ conda activate DL
(DL) atif@aihwkit:~$

9 Replies

Atif•3y ago

conda activate works when i login through the web terminal so it ensures that shell has been configured to run conda activate command But this does not work in the template startup_script fixed it by specifying full path of jupyter

/home/${data.coder_workspace.me.owner}/miniconda/envs/DL/bin/jupyter notebook --no-browser --NotebookApp.token='' --ip='*' --NotebookApp.base_url=/@${data.coder_workspace.me.owner}/${lower(data.coder_workspace.me.name)}/apps/jupyter-notebook/ 2>&1 | tee -a ~/build.log &

Phorcys•3y ago

? oh i see you fixed it already good, because I had no clue of what to do

Atif•3y ago

but I am wondering why the startup_script could not initialize the conda env

Phorcys•3y ago

well, did you try doing conda init bash ? in your startup_script

conda init bash
source ~/.bashrc
jupyter [...]

conda init bash
source ~/.bashrc
jupyter [...]

Atif•3y ago

I am doing it while building my image and it adds to .bashrc

Phorcys•3y ago

oh well then this should work

Atif•3y ago

also after we run conda init bash we can not activate in the same shell we need to open a new shell or source .bashrc that could work but for now I am using the full path of jupyter and it is working.

Phorcys•3y ago

alright mark as resolved if it's good for you

Atif•3y ago

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can not activate conda enviornment in `startup_script`